There are Aegean Airlines flights from and to Vienna Airport in the table below.
| Destination | Flights | Distance |
|---|---|---|
| Vienna Schwechat - Dubrovnik Airport (Dubrovnik) | A34805 | 634 km |
| Echterdingen (Stuttgart) - Vienna Schwechat | A34209 | 546 km |
| Elefherios Venizelos International Airport (Athens) - Vienna Schwechat | A3860 | 1283 km |
| Vienna Schwechat - Elefherios Venizelos International Airport (Athens) | A3861 | 1283 km |
| Elefherios Venizelos International Airport (Athens) - Vienna Schwechat | A3862 | 1283 km |
| Vienna Schwechat - Elefherios Venizelos International Airport (Athens) | A3863 | 1283 km |
| Elefherios Venizelos International Airport (Athens) - Vienna Schwechat | A3880 | 1283 km |
| Vienna Schwechat - Elefherios Venizelos International Airport (Athens) | A3881 | 1283 km |
| Elefherios Venizelos International Airport (Athens) - Vienna Schwechat | A3882 | 1283 km |
| Vienna Schwechat - Elefherios Venizelos International Airport (Athens) | A3883 | 1283 km |
| Elefherios Venizelos International Airport (Athens) - Vienna Schwechat | A34050 | 1283 km |
| Vienna Schwechat - Elefherios Venizelos International Airport (Athens) | A34051 | 1283 km |
| Elefherios Venizelos International Airport (Athens) - Vienna Schwechat | A34060 | 1283 km |
| Vienna Schwechat - Elefherios Venizelos International Airport (Athens) | A34061 | 1283 km |
| Elefherios Venizelos International Airport (Athens) - Vienna Schwechat | A34062 | 1283 km |
| Vienna Schwechat - Elefherios Venizelos International Airport (Athens) | A34063 | 1283 km |
| Elefherios Venizelos International Airport (Athens) - Vienna Schwechat | A34080 | 1283 km |
| Vienna Schwechat - Elefherios Venizelos International Airport (Athens) | A34081 | 1283 km |
| Elefherios Venizelos International Airport (Athens) - Vienna Schwechat | A36002 | 1283 km |
| Vienna Schwechat - Elefherios Venizelos International Airport (Athens) | A36003 | 1283 km |
| Elefherios Venizelos International Airport (Athens) - Vienna Schwechat | A36160 | 1283 km |
| Vienna Schwechat - Elefherios Venizelos International Airport (Athens) | A36161 | 1283 km |
| Elefherios Venizelos International Airport (Athens) - Vienna Schwechat | A36162 | 1283 km |
| Vienna Schwechat - Elefherios Venizelos International Airport (Athens) | A36181 | 1283 km |
| Franz Josef Strauss (Munich) - Vienna Schwechat | A34805 | 355 km |
| Kalamata Airport (Kalamata) - Vienna Schwechat | A36190 | 1311 km |
| Vienna Schwechat - Kalamata Airport (Kalamata) | A36193 | 1311 km |
| Larnaca International (Larnaca) - Vienna Schwechat | A34785 | 2041 km |
| Makedonia Airport (Thessaloniki) - Vienna Schwechat | A3598 | 988 km |
| Vienna Schwechat - Makedonia Airport (Thessaloniki) | A3599 | 988 km |
| N. Kazantzakis Airport (Heraklion) - Vienna Schwechat | A34208 | 1591 km |
| Vienna Schwechat - N. Kazantzakis Airport (Heraklion) | A34209 | 1591 km |
| N. Kazantzakis Airport (Heraklion) - Vienna Schwechat | A34210 | 1591 km |
| Vienna Schwechat - N. Kazantzakis Airport (Heraklion) | A34211 | 1591 km |
| Vienna Schwechat - N. Kazantzakis Airport (Heraklion) | A34291 | 1591 km |
| N. Kazantzakis Airport (Heraklion) - Vienna Schwechat | A34292 | 1591 km |
| Vienna Schwechat - N. Kazantzakis Airport (Heraklion) | A36109 | 1591 km |
| N. Kazantzakis Airport (Heraklion) - Vienna Schwechat | A36110 | 1591 km |
| Vienna Schwechat - N. Kazantzakis Airport (Heraklion) | A36111 | 1591 km |
| Vienna Schwechat - N. Kazantzakis Airport (Heraklion) | A36151 | 1591 km |
